Capizzi, M., Carpentier, R., Denarier, E., Adrait, A., Kassem, R., Mapelli, M., Couté, Y., & Humbert, S. (2022). Developmental defects in Huntington’s disease show that axonal growth and microtubule reorganization require NUMA1. Neuron, 110(1), 36-50.e5. https://doi.org/10.1016/j.neuron.2021.10.033

Permiakova, O., & Burger, T. (2022). Sketched Stochastic Dictionary Learning for large‐scale data and application to high‐throughput mass spectrometry. Statistical Analysis and Data Mining: The ASA Data Science Journal, 15(1), 43–56. https://doi.org/10.1002/sam.11542

Rezaei-Gazik, M., Vargas, A., Amiri-Yekta, A., Vitte, A.-L., Akbari, A., Barral, S., Esmaeili, V., Chuffart, F., Sadighi-Gilani, M. A., Couté, Y., Eftekhari-Yazdi, P., Khochbin, S., Rousseaux, S., & Totonchi, M. (2022). Direct visualization of pre-protamine 2 detects protamine assembly failures and predicts ICSI success. Molecular Human Reproduction, 28(2), gaac004. https://doi.org/10.1093/molehr/gaac004

Caron, M., Gely, L., Garvis, S., Adrait, A., Couté, Y., Palladino, F., & Fabrizio, P. (2022). Loss of SET1/COMPASS methyltransferase activity reduces lifespan and fertility in Caenorhabditis elegans. Life Science Alliance, 5(3), e202101140. https://doi.org/10.26508/lsa.202101140

Gfrerer, S., Winkler, D., Novion Ducassou, J., Couté, Y., Rachel, R., & Gescher, J. (2022). A Micrarchaeon Isolate Is Covered by a Proteinaceous S-Layer. Applied and Environmental Microbiology, 88(5), e01553-21. https://doi.org/10.1128/aem.01553-21

Ben Amar, D., Thoinet, K., Villalard, B., Imbaud, O., Costechareyre, C., Jarrosson, L., Reynaud, F., Novion Ducassou, J., Couté, Y., Brunet, J.-F., Combaret, V., Corradini, N., Delloye-Bourgeois, C., & Castellani, V. (2022). Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model. Nature Communications, 13(1), 2549. https://doi.org/10.1038/s41467-022-30237-3

Vigetti, L., Labouré, T., Roumégous, C., Cannella, D., Touquet, B., Mayer, C., Couté, Y., Frénal, K., Tardieux, I., & Renesto, P. (2022). The BCC7 Protein Contributes to the Toxoplasma Basal Pole by Interfacing between the MyoC Motor and the IMC Membrane Network. International Journal of Molecular Sciences, 23(11), 5995. https://doi.org/10.3390/ijms23115995

Fancello, L., & Burger, T. (2022). An analysis of proteogenomics and how and when transcriptome-informed reduction of protein databases can enhance eukaryotic proteomics. Genome Biology, 23(1), 132. https://doi.org/10.1186/s13059-022-02701-2

Dragic, H., Barthelaix, A., Duret, C., Le Goupil, S., Laprade, H., Martin, S., Brugière, S., Couté, Y., Machon, C., Guitton, J., Rudewicz, J., Hofman, P., Lebecque, S., Chaveroux, C., Ferraro-Peyret, C., Renno, T., & Manié, S. N. (2022). The hexosamine pathway and coat complex II promote malignant adaptation to nutrient scarcity. Life Science Alliance, 5(7), e202101334. https://doi.org/10.26508/lsa.202101334

Burger, T. (2022). Can Omics Biology Go Subjective because of Artificial Intelligence? A Comment on “Challenges and Opportunities for Bayesian Statistics in Proteomics” by Crook et al. Journal of Proteome Research, 21(7), 1783–1786. https://doi.org/10.1021/acs.jproteome.2c00161

Filhol, O., Hesse, A.-M., Bouin, A.-P., Albigès-Rizo, C., Jeanneret, F., Battail, C., Pflieger, D., & Cochet, C. (2022). CK2β Is a Gatekeeper of Focal Adhesions Regulating Cell Spreading. Frontiers in Molecular Biosciences, 9, 900947. https://doi.org/10.3389/fmolb.2022.900947

Job, V., Gomez-Valero, L., Renier, A., Rusniok, C., Bouillot, S., Chenal-Francisque, V., Gueguen, E., Adrait, A., Robert-Genthon, M., Jeannot, K., Panchev, P., Elsen, S., Fauvarque, M.-O., Couté, Y., Buchrieser, C., & Attrée, I. (2022). Genomic erosion and horizontal gene transfer shape functional differences of the ExlA toxin in Pseudomonas spp. IScience, 25(7), 104596. https://doi.org/10.1016/j.isci.2022.104596

Villalta, A., Schmitt, A., Estrozi, L. F., Quemin, E. R. J., Alempic, J.-M., Lartigue, A., Pražák, V., Belmudes, L., Vasishtan, D., Colmant, A. M. G., Honoré, F. A., Couté, Y., Grünewald, K., & Abergel, C. (2022). The giant mimivirus 1.2 Mb genome is elegantly organized into a 30-nm diameter helical protein shield. ELife, 11, e77607. https://doi.org/10.7554/eLife.77607

Mladenov, P., Zasheva, D., Planchon, S., Leclercq, C. C., Falconet, D., Moyet, L., Brugière, S., Moyankova, D., Tchorbadjieva, M., Ferro, M., Rolland, N., Renaut, J., Djilianov, D., & Deng, X. (2022). Proteomics Evidence of a Systemic Response to Desiccation in the Resurrection Plant Haberlea rhodopensis. International Journal of Molecular Sciences, 23(15), 8520. https://doi.org/10.3390/ijms23158520

Nyonda, M. A., Boyer, J.-B., Belmudes, L., Krishnan, A., Pino, P., Couté, Y., Brochet, M., Meinnel, T., Soldati-Favre, D., & Giglione, C. (2022). N-acetylation of secreted proteins in Apicomplexa is widespread and is independent of the ER acetyl-CoA transporter AT1. Journal of Cell Science, 135(15), jcs259811. https://doi.org/10.1242/jcs.259811

Swale, C., Bellini, V., Bowler, M. W., Flore, N., Brenier-Pinchart, M.-P., Cannella, D., Belmudes, L., Mas, C., Couté, Y., Laurent, F., Scherf, A., Bougdour, A., & Hakimi, M.-A. (2022). Altiratinib blocks Toxoplasma gondii and Plasmodium falciparum development by selectively targeting a spliceosome kinase. Science Translational Medicine, 14(656), eabn3231. https://doi.org/10.1126/scitranslmed.abn3231

Abulfaraj, A. A., Alhoraibi, H. M., Mariappan, K., Bigeard, J., Zhang, H., Almeida-Trapp, M., Artyukh, O., Abdulhakim, F., Parween, S., Pflieger, D., Blilou, I., Hirt, H., & Rayapuram, N. (2022). Analysis of the Arabidopsis coilin mutant reveals a positive role of AtCOILIN in plant immunity. Plant Physiology, 190(1), 745–761. https://doi.org/10.1093/plphys/kiac280

Ruedas, R., Muthukumar, S. S., Kieffer-Jaquinod, S., Gillet, F.-X., Fenel, D., Effantin, G., Pfannschmidt, T., Couté, Y., Blanvillain, R., & Cobessi, D. (2022). Three-Dimensional Envelope and Subunit Interactions of the Plastid-Encoded RNA Polymerase from Sinapis alba. International Journal of Molecular Sciences, 23(17), 9922. https://doi.org/10.3390/ijms23179922

Lukinović, V., Hausmann, S., Roth, G. S., Oyeniran, C., Ahmad, T., Tsao, N., Brickner, J. R., Casanova, A. G., Chuffart, F., Benitez, A. M., Vayr, J., Rodell, R., Tardif, M., Jansen, P. W. T. C., Couté, Y., Vermeulen, M., Hainaut, P., Mazur, P. K., Mosammaparast, N., & Reynoird, N. (2022). SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk. Cancer Discovery, 12(9), 2158–2179. https://doi.org/10.1158/2159-8290.CD-21-0205

Vilallongue, N., Schaeffer, J., Hesse, A.-M., Delpech, C., Blot, B., Paccard, A., Plissonnier, E., Excoffier, B., Couté, Y., Belin, S., & Nawabi, H. (2022). Guidance landscapes unveiled by quantitative proteomics to control reinnervation in adult visual system. Nature Communications, 13(1), 6040. https://doi.org/10.1038/s41467-022-33799-4

Lacroux, J., Atteia, A., Brugière, S., Couté, Y., Vallon, O., Steyer, J.-P., & van Lis, R. (2022). Proteomics unveil a central role for peroxisomes in butyrate assimilation of the heterotrophic Chlorophyte alga Polytomella sp. Frontiers in Microbiology, 13, 1029828. https://doi.org/10.3389/fmicb.2022.1029828

da Silva Barreira, D., Lapaquette, P., Novion Ducassou, J., Couté, Y., Guzzo, J., & Rieu, A. (2022). Spontaneous Prophage Induction Contributes to the Production of Membrane Vesicles by the Gram-Positive Bacterium Lacticaseibacillus casei BL23. MBio, 13(5), e0237522. https://doi.org/10.1128/mbio.02375-22

Barnault, R., Verzeroli, C., Fournier, C., Michelet, M., Redavid, A. R., Chicherova, I., Plissonnier, M.-L., Adrait, A., Khomich, O., Chapus, F., Richaud, M., Hervieu, M., Reiterer, V., Centonze, F. G., Lucifora, J., Bartosch, B., Rivoire, M., Farhan, H., Couté, Y., … Parent, R. (2022). Hepatic inflammation elicits production of proinflammatory netrin-1 through exclusive activation of translation. Hepatology (Baltimore, Md.), 76(5), 1345–1359. https://doi.org/10.1002/hep.32446

Lupette, J., Tardif, M., Brugière, S., Couté, Y., Salvaing, J., & Maréchal, E. (2022). Quantitative proteomic analyses reveal the impact of nitrogen starvation on the proteome of the model diatom Phaeodactylum tricornutum. Proteomics, 22(22), e2200155. https://doi.org/10.1002/pmic.202200155

Ten Hoeve, A. L., Braun, L., Rodriguez, M. E., Olivera, G. C., Bougdour, A., Belmudes, L., Couté, Y., Saeij, J. P. J., Hakimi, M.-A., & Barragan, A. (2022). The Toxoplasma effector GRA28 promotes parasite dissemination by inducing dendritic cell-like migratory properties in infected macrophages. Cell Host & Microbe, 30(11), 1570-1588.e7. https://doi.org/10.1016/j.chom.2022.10.001

Leisico, F., Omeiri, J., Le Narvor, C., Beaudouin, J., Hons, M., Fenel, D., Schoehn, G., Couté, Y., Bonnaffé, D., Sadir, R., Lortat-Jacob, H., & Wild, R. (2022). Structure of the human heparan sulfate polymerase complex EXT1-EXT2. Nature Communications, 13(1), 7110. https://doi.org/10.1038/s41467-022-34882-6

Ielasi, F. S., Ternifi, S., Fontaine, E., Iuso, D., Couté, Y., & Palencia, A. (2022). Human histone pre-mRNA assembles histone or canonical mRNA-processing complexes by overlapping 3’-end sequence elements. Nucleic Acids Research, 50(21), 12425–12443. https://doi.org/10.1093/nar/gkac878

Binda, O., Juillard, F., Ducassou, J. N., Kleijwegt, C., Paris, G., Didillon, A., Baklouti, F., Corpet, A., Couté, Y., Côté, J., & Lomonte, P. (2022). SMA-linked SMN mutants prevent phase separation properties and SMN interactions with FMRP family members. Life Science Alliance, 6(1), e202201429. https://doi.org/10.26508/lsa.202201429

Etourneau, L., & Burger, T. (2022). Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al. Journal of Proteome Research, 21(12), 2840–2845. https://doi.org/10.1021/acs.jproteome.2c00279

Timcheva, K., Dufour, S., Touat-Todeschini, L., Burnard, C., Carpentier, M.-C., Chuffart, F., Merret, R., Helsmoortel, M., Ferré, S., Grézy, A., Couté, Y., Rousseaux, S., Khochbin, S., Vourc’h, C., Bousquet-Antonelli, C., Kiernan, R., Seigneurin-Berny, D., & Verdel, A. (2022). Chromatin-associated YTHDC1 coordinates heat-induced reprogramming of gene expression. Cell Reports, 41(11), 111784. https://doi.org/10.1016/j.celrep.2022.111784

Lai, S.-H., Reynaud, A., Zhang, N.-N., Kwak, M., Vysotskyi, B., Dominguez-Medina, S., Fortin, T., Clement, K., Defoort, M., Lee, T. G., Liu, K., Hentz, S., & Masselon, C. D. (2022). Characterizing Nanoparticle Mass Distributions Using Charge-Independent Nanoresonator Mass Spectrometry. The Journal of Physical Chemistry C, 126(49), 20946–20953. https://doi.org/10.1021/acs.jpcc.2c06675

Courçon, M., Badiou, C., Louwagie, M., Etievant, S., Jaquinod, M., Lina, G., & Brun, V. (2022). Targeted Proteomics Analysis of Staphylococcal Superantigenic Toxins in Menstrual Fluid from Women with Menstrual Toxic Shock Syndrome (mTSS). Toxins, 14(12), 886. https://doi.org/10.3390/toxins14120886